librostlab-blast
1.0.1
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Classes | |
struct | hit |
Blast hit. More... | |
struct | hsp |
High-scoring segment pair. More... | |
class | location |
Two points in a source file. More... | |
struct | oneline |
One-line description. More... | |
class | parser |
A Bison parser. More... | |
class | parser_driver |
Blast (default, -m 0) output parser. More... | |
class | parser_error |
class | position |
A point in a source file. More... | |
struct | result |
Blast result for one query. More... | |
struct | round |
Data specific to an iterated blast round. More... | |
Functions | |
position & | operator+= (position &res, int width) |
Add width columns, in place. More... | |
position | operator+ (position res, int width) |
Add width columns. More... | |
position & | operator-= (position &res, int width) |
Subtract width columns, in place. More... | |
position | operator- (position res, int width) |
Subtract width columns. More... | |
bool | operator== (const position &pos1, const position &pos2) |
Compare two position objects. More... | |
bool | operator!= (const position &pos1, const position &pos2) |
Compare two position objects. More... | |
template<typename YYChar > | |
std::basic_ostream< YYChar > & | operator<< (std::basic_ostream< YYChar > &ostr, const position &pos) |
Intercept output stream redirection. More... | |
location & | operator+= (location &res, const location &end) |
Join two locations, in place. More... | |
location | operator+ (location res, const location &end) |
Join two locations. More... | |
location & | operator+= (location &res, int width) |
Add width columns to the end position, in place. More... | |
location | operator+ (location res, int width) |
Add width columns to the end position. More... | |
location & | operator-= (location &res, int width) |
Subtract width columns to the end position, in place. More... | |
location | operator- (location res, int width) |
Subtract width columns to the end position. More... | |
bool | operator== (const location &loc1, const location &loc2) |
Compare two location objects. More... | |
bool | operator!= (const location &loc1, const location &loc2) |
Compare two location objects. More... | |
template<typename YYChar > | |
std::basic_ostream< YYChar > & | operator<< (std::basic_ostream< YYChar > &ostr, const location &loc) |
Intercept output stream redirection. More... | |
Compare two position objects.
Definition at line 161 of file blast-parser-location.h.
Compare two location objects.
Definition at line 291 of file blast-parser-location.h.
Add width columns.
Definition at line 129 of file blast-parser-location.h.
Join two locations.
Definition at line 252 of file blast-parser-location.h.
Add width columns to the end position.
Definition at line 265 of file blast-parser-location.h.
Add width columns, in place.
Definition at line 121 of file blast-parser-location.h.
Join two locations, in place.
Definition at line 245 of file blast-parser-location.h.
Add width columns to the end position, in place.
Definition at line 258 of file blast-parser-location.h.
Subtract width columns.
Definition at line 143 of file blast-parser-location.h.
Subtract width columns to the end position.
Definition at line 277 of file blast-parser-location.h.
Subtract width columns, in place.
Definition at line 136 of file blast-parser-location.h.
Subtract width columns to the end position, in place.
Definition at line 271 of file blast-parser-location.h.
std::basic_ostream<YYChar>& rostlab::blast::operator<< | ( | std::basic_ostream< YYChar > & | ostr, |
const position & | pos | ||
) |
Intercept output stream redirection.
ostr | the destination output stream |
pos | a reference to the position to redirect |
Definition at line 172 of file blast-parser-location.h.
std::basic_ostream<YYChar>& rostlab::blast::operator<< | ( | std::basic_ostream< YYChar > & | ostr, |
const location & | loc | ||
) |
Intercept output stream redirection.
ostr | the destination output stream |
loc | a reference to the location to redirect |
Avoid duplicate information.
Definition at line 304 of file blast-parser-location.h.
Compare two position objects.
Definition at line 150 of file blast-parser-location.h.
Compare two location objects.
Definition at line 284 of file blast-parser-location.h.